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While you could download the file from GEO (or just directly from SRA), it would seem easier to just remove the -Z option and allow fastq-dump Computational Techniques for Life Sciences : Part of the TACC Institute Series, Immersive Archive. https://www.ncbi.nlm.nih.gov/sra/SRX2771645 Hands-on: Try downloading and extracting genome index and annotation files to a directory.

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